We recommend to install prerequisites using the conda package manager. Make sure to have conda
installed, e.g. via
- Miniconda
- download the Miniconda installer for Python 3
- run
bash Miniconda3-latest-Linux-x86_64.sh
to install Miniconda - Answer the question "Do you wish the installer to prepend the Miniconda install location to PATH in your /home/.../.bashrc ?" with yes
OR do
PATH=dir/to/miniconda3:$PATH
after installation process
Clone the ADMIRE repository and populate an environment with all prerequisites:
$ git clone https://github.molgen.mpg.de/loosolab/admire
$ conda env create -f admire/environment.yaml
$ export PATH=$PATH:dir/to/admire/src
Every time you intent to use ADMIRE, make sure the environment is activated:
$ source activate admire
$ admire -h